Payroll · 6 min read
A practical guide to payroll compliance in Nigeria
Running payroll in Nigeria is about more than paying a salary. Employers have to withhold and remit several statutory items, keep clean records, and issue payslips. Here is a plain-English overview of the main pieces — treat it as a starting map, and confirm current rates and thresholds against the latest law.
June 2026
PAYE (Pay As You Earn)
PAYE is personal income tax withheld from employees' pay. As the employer, you deduct it from each employee's salary and remit it to the relevant State Internal Revenue Service, usually monthly.
Nigerian personal income tax is progressive — higher earnings are taxed at higher bands, after statutory reliefs and allowances. The bands and reliefs are set by law and can change, so calculate against current rules.
Pension (Contributory Pension Scheme)
Under the Pension Reform Act, qualifying employers must operate a contributory pension scheme. Both the employer and the employee contribute a percentage of the employee's qualifying emoluments into the employee's Retirement Savings Account with a Pension Fund Administrator.
Confirm the current minimum contribution rates and which employers are in scope, as thresholds for small employers have specific rules.
NHF (National Housing Fund)
The National Housing Fund is a contribution that supports access to housing finance. Where it applies, a percentage of the employee's basic salary is deducted and remitted.
NSITF (Employee Compensation Scheme)
NSITF administers the Employee Compensation Scheme, which provides cover for work-related injury or death. This is typically an employer contribution based on payroll, not deducted from employees.
ITF (Industrial Training Fund)
Qualifying employers contribute to the Industrial Training Fund, a training levy assessed on annual payroll, with reimbursement available for approved training. Whether you are in scope depends on employee count and turnover thresholds.
Records and payslips
Keep accurate, auditable payroll records and issue payslips so employees can see their gross pay, deductions, and net pay. Good records make remittances, audits, and disputes far easier to handle.
Common pitfalls
- Manual spreadsheet errors that compound month over month
- Missed or late statutory remittances
- No clear audit trail of who changed what and when
- Payslips that don't reconcile with what was actually paid
How the right software helps
A payroll system that understands Nigerian statutory items calculates draft figures for review, keeps a clean record of every run, issues consistent payslips, and logs changes — so compliance becomes a routine you can trust rather than a monthly scramble.
This article is general information, not tax or legal advice. Statutory rates, bands, and thresholds change — always confirm the current figures with the relevant authorities (e.g. FIRS, your State IRS, PenCom) or your professional adviser before running payroll.
